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SRX105944: Vaucheria litorea transcriptome
2 LS454 (454 GS FLX) runs: 30 spots, 7,376 bases, 76,723b downloads

Design: Total RNA was isolated from whole algal filaments. poly[A] RNA was enriched for and dscDNA was generated using the Evrogen dscDNA synthesis kit. The dscDNA was normalized, then amplified and sent to Roche 454 for sequencing.
Submitted by: UNIVERSITY OF SOUTH FLORIDA
Study: Vaucheria litorea Transcriptome or Gene expression
show Abstracthide Abstract
The heterokont alga, Vaucheria litorea, is the donor of horizontally transferred genes to the genome of the sacoglossan sea slug, Elysia chlorotica. Upon feeding, the sea slug captures algal chloroplast in specialized cells lining its digestive diverticula where an endosymbiotic relationship is then established. Once captured, the chloroplasts remain photosynthetically active for the remaining part of the slug's life cycle (~10 months) without any additional input of algal food. By sequencing the algal transcriptome we will establish a database of native algal sequence to use to identify additional transferred genes in Elysia chlorotica.
Sample: Vaucheria litorea 454 transcriptome reads matching to chloroplast and genomic sequences
SAMN00759049 • SRS271091 • All experiments • All runs
Library:
Name: Vaucheria litorea
Instrument: 454 GS FLX
Strategy: EST
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Spot descriptor:
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Runs: 2 runs, 30 spots, 7,376 bases, 76,723b
Run# of Spots# of BasesSizePublished
SRR496215235,70540,456b2012-11-10
SRR49621671,67136,267b2012-11-10

ID:
123183

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